Sales excluding autos and auto parts rose by 0.4% from August. Analysts expected sales ex-autos to jump 0.4%.
Strength in auto, electronics and online sales paced the September incline.
Auto and other motor vehicle dealers sales were up 1.6% over August and 19% over a year earlier. Electronics stores reported a 1.5% increase over August, while online stores ticked up by 1%.
"Overall this is a significantly stronger report than expected," Ian Shepherdson, an economist at High Frequency Economics wrote in a research note.
Strong retail sales are another indication that shoppers might be ending their hibernation at just the right time for retailers, who rely heavily on holiday shopping to boost profit.
"It is increasingly clear that we are seeing 'frugal fatigue' give way to 'calculated consumption,' " Marshal Cohen, chief industry analyst at NPD Group said in a statement.
0:00/1:04What do you splurge on?In a separate report released last week, individual retailers reported strong sales results for September.
Thomson Reuters, which tracks same-store sales for a group of 28 national chains, said total sales for the group rose 2.8% in September.
An important gauge of a retailer's health, same-store sales have been on the rise for 13 months in a row, according to Thomson Reuters.
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